基因總覽
RYR1 是蛋白質編碼基因,產物 ryanodine receptor 1 屬於 ryanodine receptor 家族中的 RYR1 subfamily。此蛋白質是大型多次跨膜蛋白,位於肌漿網膜;其長段區域朝向細胞質,末端也位於細胞質側。蛋白質序列包含多個 MIR 與 B30.2/SPRY 結構域、重複區及 EF-hand 結構域,膜內則有多段跨膜螺旋。這些結構特徵構成一種大型膜通道蛋白的基本架構。RYR1 產物在肌肉鈣離子調節中扮演重要角色,與骨骼肌收縮相關;來源亦指出它參與胚胎期肌纖維與骨骼肌的正常發育。
基因異名與舊稱
異名取自 HGNC,可能包含歷史名稱;蛋白質名稱以 UniProt 註解為準。
染色體位置與基因結構
查看實際轉錄本與 exon 註解
| Transcript | Genomic coordinates | Exons |
|---|---|---|
| ENST00000359596 ★ | 38,433,691–38,587,564 | 106 |
| ENST00000689936 | 38,433,691–38,587,420 | 105 |
| ENST00000713952 | 38,433,691–38,587,564 | 105 |
| ENST00000355481 | 38,433,691–38,587,564 | 105 |
| ENST00000713953 | 38,433,691–38,587,564 | 104 |
顯示 5/5 個蛋白質編碼轉錄本;canonical 優先。
帶型與著絲點依 Ensembl 座標繪製;核染色體長度以 GRCh38 第 1 號染色體為共同尺度。黃色標記表示本基因位置,細小區間加粗以利辨識;實際基因長度與 exon 見下方資料。
分子功能與生物學過程
ryanodine receptor 1 是受細胞質鈣離子活化的鈣離子通道,可將肌漿網儲存的 Ca(2+) 釋放至細胞質。當 T 小管去極化後,這種鈣離子釋放是啟動肌肉收縮的重要環節,使肌漿網內的鈣離子儲存與細胞質中的訊號變化連結起來。
通道活性會受到生理狀態影響。反覆進行極高強度運動時,RYR1 通道開啟的機率會增加,並導致 Ca(2+) 洩漏至細胞質。此現象描述的是通道開啟機率與鈣離子外漏的變化;來源未將其延伸為其他運動條件下的普遍結果。
RYR1 也能介導神經元細胞內儲存鈣離子的釋放,並可能因此促進腦部持續較久的 Ca(2+) 訊號。這項作用以「可能」描述,不能視為已確立的神經效應。其鈣離子通道活動因此不只與肌肉相關,亦可能參與神經元內的鈣訊號調節。
在發育方面,RYR1 對胚胎期肌纖維及骨骼肌的正常發育是必要的;來源亦指出它對正常心臟形態形成、皮膚發育與胚胎期骨化有必要性,但這些發育功能標註為相似性推論。整體而言,來源支持的主要功能包括肌漿網鈣離子釋放、肌肉收縮啟動,以及若干發育過程中的必要作用;不同作用的證據確定性並不相同。
Promoter 與基因調控
>RYR1 ENST00000359596 GRCh38 chr19:38432691-38433791 strand=1 5′→3′ 相對 TSS:-1000 到 +100 bp;1101 bp 依轉錄本 TSS 擷取的基因組序列;TSS = 0,兩端包含,未驗證為 promoter GCAGTGAGTCAAGATCTTGCCACTGCACTCCAGTCTGGGCAACAAGAGCAAGAGTCCGTCTCAAAATAAA TAAATAAATAAATAAATAATAATAATAGCAACACTTACATTACATTAACCAGGCACTGGCACTGTTTTAA GTTTTATCTCATTTAATTAATTATCTCATTTAACTCTCCCAACAACCACGTGAGGTCGGTACTATTAATA TTCCCCTTACTGGATGGGGAAACCGAGGCACAGAGAAGCTAAGTGGCTTATCCATGTAACTCAAGGAAGT GGCAAGGCTGGGTGGGATTCAGATCCAGATTATCTGGCTTGGAGTCGGAGTCCTTGTTCTTTTTTTTTTT TTTTTCAGACGAAGTCTCGCCCAGGCTGGAGTGCAGTGGCTCAATCTCGGCTCACTGCAGCTTCTGCCTC CCGAATTCAAGGAGTTCAAGCAATTCTCCTGCCTCAGTTTCCCAAGTGGCTGGGATTACAAGCATGTGTC ACCACGCCTGGCTAATTTTTGTACTTTTAGTAGAGACGGGGGTTTCACCATGTTGGCCAGGCTGGCCTCG AACTCCTGACCTCAAGTGATCCACCCACCTCGGCGTCCCAAAGTGCTGAGATTACAGGGGTGAGCCACCA CTCCCGGCCGGAGTCCTTGTTCTTAATCACTATGTTTGGTGCTTTTTAAAGTCAGGAGATCTGGTGCACA TCCCTGCTCTGCTGCGTGATATCTTGCAAGAACTTCCCCACTCAGAGCCTCAGTCTGCCCTCTGTGAAAT GGGAGAATGATGGCACGTTACTTACCGTGGTGGGGAGAAAGCGCAGGTACCTCCTAGATACTCTCTCTCC CACCCCACCTCCGGCGGCCAACGGCCAAGCAAACCTCCAGCCAAGATTTGGGGTATGTGGGCAGGGCTCC GGCGAAGGGGAGTGGCCGGGGAGTCCTGGTCCAATGGGGCCCGGGGGCGGGGACTTCCTCCCATCTCTGT CCAGCATGCGTGTACTCCTCGCAGTTCCATCTACCTCGCGGGTGCCTCTGGTGTCTCCAGAGGTCTCCGA CCCCAGCCCGCCCCCAGCCCTCCCGCCCAGCCCGCAGCCCCCTCCCTCTGT
EPDnew 實驗支持 promoter/TSS · 1 筆
| EPDnew ID | TSS(1-based) | 股向 | 來源顯示區間 |
|---|---|---|---|
| RYR1_1 ↗ | 19:38,433,691 | 正股 | 38,433,642–38,433,701 |
EPDnew human v006 · UCSC hg38,GRCh38/hg38,透過 UCSC 取得。TSS 具有 CAGE/RAMPAGE 等實驗資料支持;任意擷取的上下游區間仍需另行判讀調控功能,不能視為整段皆經功能驗證。
EPD 封存狀態 ↗ · UCSC 資料說明 ↗ · EPD team, SIB Swiss Institute of Bioinformatics; UCSC Genome Browser · CC BY 4.0
查看已取得的調控/motif 註解
ENSR19_9K8TR · promoter · 38433291–38433709 · regulatory
ENSR19_C5RZ9 · enhancer · 38434230–38435308 · regulatory
· motif · 38429629–38429642 · motif
· motif · 38433606–38433616 · motif
· motif · 38433643–38433653 · motif
· motif · 38434700–38434710 · motif
· motif · 38434825–38434835 · motif
· motif · 38434830–38434840 · motif
· motif · 38434861–38434872 · motif
· motif · 38434865–38434879 · motif
· motif · 38434865–38434879 · motif
· motif · 38436862–38436874 · motif
· motif · 38436866–38436879 · motif
· motif · 38436952–38436964 · motif
· motif · 38436955–38436962 · motif
蛋白質結構域與序列
參考蛋白質長度:5038 aa
ryanodine receptor 1 長 5038 個胺基酸,屬於 ryanodine receptor 家族的 RYR1 subfamily。其 N 端至大部分序列位於細胞質側,C 端亦為細胞質區域;膜區含六段跨膜螺旋註解。序列另含 MIR、B30.2/SPRY、EF-hand 結構域及多個重複區,並標註若干無序區域。
蛋白質三維結構
細胞內定位
RYR1 位於肌漿網膜,屬多次跨膜蛋白;其 N 端與 C 端均朝向細胞質。 來源指出跨膜結構域數目在不同直系同源蛋白間有所差異,但未提供人類 RYR1 的定位改變條件或異構型間差異。
未繪示構造:Sarcoplasmic reticulum membrane。這些構造未在通用細胞圖中標點,仍保留來源定位名稱。
動物細胞結構示意;器官大小與數量不按比例。點選細胞構造可查看定位註解。
交互作用與訊號網絡
拖曳節點後放開可帶動位置變化;點選夥伴查看證據。位置與連線長度不代表結合強度,圖中未推定夥伴彼此之間的關係。
RYR1 可形成同源四聚體,也可能與 RYR2 形成異源四聚體,此項為相似性推論。它被辨識於含 PDE4D、PKA、FKBP1A 與 PP1 的複合體中;反覆極高強度運動會降低其與 PDE4D 及 PP1 的交互作用。FKBP1A 結合可穩定通道關閉構形;CALM 結合鈣離子後會抑制通道活性。CACNA1S 的交互作用對通道活化重要,TRDN 與 ASPH 則會刺激通道活性。來源另記載 RYR1 與 S100A1、CACNB1、SELENON 及 scorpion calcins 互作,但未說明這些互作的具體功能。
疾病與遺傳關聯
RYR1 變異與惡性高熱易感性相關;這是常染色體顯性藥物遺傳疾病,易感者可能在使用吸入性麻醉劑或去極化肌肉鬆弛劑後發作。RYR1 變異也可造成常染色體顯性先天性肌病 1A,患者同時有惡性高熱風險;常染色體隱性先天性肌病 1B 則可呈現嚴重肌張力低下與肌無力,嚴重程度不一。另有資料指出 RYR1 缺陷可能是 Samaritan myopathy 的病因;King-Denborough syndrome 則被描述為與 RYR1 變異相關的常染色體顯性疾病,具有先天性肌病及惡性高熱易感性。
Contextual Functional Evidence Matrix
矩陣以「功能主張」為列,以細胞情境、干預條件、量測結果與證據來源為欄,方便比較同一功能在不同條件下的支持情形。只有含情境與實驗資訊的紀錄會列入矩陣;一般功能註解另列於下方。
功能註解總覽 · 9 筆
| 功能面向 | 功能敘述 | 證據類型 | 可查核來源 |
|---|---|---|---|
| 功能 | RYR1 是受細胞質鈣離子活化的通道,能將肌漿網中的 Ca(2+) 釋放至細胞質,並在 T 小管去極化後協助啟動肌肉收縮。反覆極高強度運動會提高通道開啟機率,造成 Ca(2+) 洩漏至細胞質。它也能釋放神經元內儲存的鈣離子,可能促進腦部較持久的 Ca(2+) 訊號;胚胎發育方面,對肌纖維、骨骼肌正常發育必要,且依相似性推論亦涉及心臟形態、皮膚發育與骨化。 | 含實驗來源 | 證據與來源Cytosolic calcium-activated calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytosol and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis (By similarity) PMID 18268335 ↗ · PMID 18650434 ↗ · PMID 26115329 ↗ · PMID 11741831 ↗ · PMID 16163667 ↗ |
| 分子活性 | Ca(2+)(in) = Ca(2+)(out) | 含實驗來源 | 證據與來源Ca(2+)(in) = Ca(2+)(out) PMID 11741831 ↗ · PMID 16163667 ↗ · PMID 18268335 ↗ · PMID 18650434 ↗ · PMID 26115329 ↗ |
| 交互作用 | RYR1 形成同源四聚體,並可能依相似性推論與 RYR2 組成異源四聚體;它也出現在含 PDE4D、PKA、FKBP1A 與 PP1 的複合體中。極高強度運動會降低其與 PDE4D、PP1 的交互作用。CALM 結合鈣離子後抑制通道,FKBP1A 穩定關閉構形;CACNA1S 的交互作用有助通道活化,TRDN 與 ASPH 會刺激通道活性。另有 S100A1、CACNB1、SELENON 及 scorpion calcins 的互作紀錄。 | 含實驗來源 | 證據與來源Homotetramer. Can also form heterotetramers with RYR2 (By similarity). Identified in a complex composed of RYR1, PDE4D, PKA, FKBP1A and protein phosphatase 1 (PP1). Repeated very high-level exercise decreases interaction with PDE4D and protein phosphatase 1 (PP1). Interacts with CALM; CALM with bound calcium inhibits the RYR1 channel activity. Interacts with S100A1. Interacts with FKBP1A; this stabilizes the closed conformation of the channel. Interacts with CACNA1S; interaction with CACNA1S is important for activation of the RYR1 channel. Interacts with CACNB1. Interacts with TRDN and ASPH; these interactions stimulate RYR1 channel activity. Interacts with SELENON (By similarity). Interacts with scorpion calcins (AC P0DPT1; AC P0DM30; AC A0A1L4BJ42; AC P59868; AC P60254; AC B8QG00; AC L0GBR1; AC P60252; AC P60253) (By similarity) PMID 18268335 ↗ · PMID 18650434 ↗ |
| 細胞定位 | RYR1 位於肌漿網膜,屬多次跨膜蛋白;其 N 端與 C 端均位於細胞質側。跨膜結構域的預測數目在不同直系同源蛋白間有所差異。 | 含實驗來源 | 證據與來源Sarcoplasmic reticulum membrane / Multi-pass membrane protein; The number of predicted transmembrane domains varies between orthologs. Both N-terminus and C-terminus are cytoplasmic PMID 7556644 ↗ |
| 疾病關聯 | 惡性高熱 1 是影響骨骼肌的常染色體顯性藥物遺傳疾病,也是麻醉相關死亡的重要原因之一;RYR1 變異與疾病易感性相關。易感者可能因常用吸入性麻醉劑(如 halothane)或去極化肌肉鬆弛劑(如 succinylcholine)誘發發作,表現包括體溫過高、肌肉代謝加速、攣縮、代謝性酸中毒與心搏過速,未治療可死亡。可用咖啡因或 halothane 誘發肌肉切片攣縮的體外測試判定反應類別。 | 含實驗來源 | 證據與來源Malignant hyperthermia 1 MHS1 Autosomal dominant pharmacogenetic disorder of skeletal muscle and is one of the main causes of death due to anesthesia. In susceptible people, an MH episode can be triggered by all commonly used inhalational anesthetics such as halothane and by depolarizing muscle relaxants such as succinylcholine. The clinical features of the myopathy are hyperthermia, accelerated muscle metabolism, contractures, metabolic acidosis, tachycardia and death, if not treated with the postsynaptic muscle relaxant, dantrolene. Susceptibility to MH can be determined with the 'in vitro' contracture test (IVCT): observing the magnitude of contractures induced in strips of muscle tissue by caffeine alone and halothane alone. Patients with normal response are MH normal (MHN), those with abnormal response to caffeine alone or halothane alone are MH equivocal (MHE(C) and MHE(H) respectively). Disease susceptibility is associated with variants affecting the gene represented in this entry MIM: 145600 PMID 10051009 ↗ · PMID 10484775 ↗ · PMID 10612851 ↗ · PMID 10823104 ↗ · PMID 10888602 ↗ · PMID 11241852 ↗ · PMID 11389482 ↗ · PMID 11525881 ↗ · PMID 11575529 ↗ · PMID 11928716 ↗ · PMID 12059893 ↗ · PMID 12066726 ↗ · PMID 12123492 ↗ · PMID 12208234 ↗ · PMID 12411788 ↗ · PMID 12709367 ↗ · PMID 12883402 ↗ · PMID 1354642 ↗ · PMID 14641996 ↗ · PMID 14732627 ↗ · PMID 14985404 ↗ · PMID 15221887 ↗ · PMID 15448513 ↗ · PMID 16163667 ↗ · PMID 1774074 ↗ · PMID 19191329 ↗ · PMID 19685112 ↗ · PMID 20142353 ↗ · PMID 20681998 ↗ · PMID 23558838 ↗ |
| 疾病關聯 | 常染色體顯性先天性肌病 1A 與 RYR1 變異相關,並伴有惡性高熱易感性。患者多在嬰幼兒期出現肌張力低下及近端肌無力,以下肢較明顯;症狀起始時間與嚴重程度可變,成人期通常緩慢進展或不再惡化。常見表現包括動作發展遲緩、跑步或爬樓梯困難,也可能有輕微臉部無力、關節鬆弛及骨骼異常。肌肉檢查可見以第一型肌纖維為主及不染色的核心區。 | 含實驗來源 | 證據與來源Congenital myopathy 1A, autosomal dominant, with susceptibility to malignant hyperthermia CMYO1A An autosomal dominant myopathy characterized by hypotonia and proximal muscle weakness primarily affecting the lower limbs, beginning in infancy or early childhood. Some patients manifest later onset of symptoms. The clinical course of the disorder is usually slow or non-progressive in adulthood, and the severity of the symptoms is variable. Affected individuals typically show delayed motor development and usually achieve independent walking, although many have difficulty running or climbing stairs. Additional features often include mild facial weakness, joint laxity, shoulder girdle weakness, and skeletal manifestations, such as dislocation of the hips, foot deformities, scoliosis, and Achilles tendon contractures. Microscopic examination of affected skeletal muscle reveals a predominance of type I fibers containing amorphous-looking areas (cores) that do not stain with oxidative and phosphorylase histochemical techniques. Additional pathologic findings may also be observed on muscle biopsy. CMYO1A affected individuals are at risk for malignant hyperthermia, and both disorders may be present in the same family. The disease is caused by variants affecting the gene represented in this entry MIM: 117000 PMID 10097181 ↗ · PMID 11113224 ↗ · PMID 11709545 ↗ · PMID 11741831 ↗ · PMID 12565913 ↗ · PMID 12566385 ↗ · PMID 12937085 ↗ · PMID 14670767 ↗ · PMID 14985404 ↗ · PMID 17204054 ↗ · PMID 17226826 ↗ · PMID 18312400 ↗ · PMID 20142353 ↗ · PMID 21674524 ↗ · PMID 23558838 ↗ · PMID 24561095 ↗ · PMID 26381711 ↗ · PMID 27234031 ↗ · PMID 27586648 ↗ · PMID 7829078 ↗ · PMID 8220422 ↗ · PMID 8220423 ↗ · PMID 9497245 ↗ |
| 疾病關聯 | 常染色體隱性先天性肌病 1B 由影響 RYR1 的變異造成,通常在出生後不久或幼年出現嚴重肌張力低下、廣泛肌無力與萎縮,嚴重程度不一。患者可有動作發展遲緩、近端及軀幹肌無力、眼外肌麻痺與延髓肌無力,導致進食困難或呼吸功能不足;部分胎兒期即有胎動減少、羊水過多或生長受限,少數出現致死性胎兒運動不能。肌肉切片可見肌節紊亂與粒線體減少區。 | 含實驗來源 | 證據與來源Congenital myopathy 1B, autosomal recessive CMYO1B An autosomal recessive myopathy characterized by severe hypotonia and generalized muscle weakness and atrophy apparent soon after birth or in early childhood. Affected individuals show delayed motor development, proximal muscle weakness with axial and shoulder girdle involvement, difficulty walking or running, external ophthalmoplegia, and bulbar weakness often resulting in feeding difficulties and respiratory insufficiency. Disease severity is variable. Some affected individuals show symptoms in utero, including reduced fetal movements, polyhydramnios, and intrauterine growth restriction. Some patients have lethal fetal akinesia with death in utero. Muscle biopsy can show variable findings, including multiple and poorly circumscribed areas of sarcomere disorganization and mitochondria depletion (areas termed minicores). Typically, no dystrophic signs, such as muscle fiber necrosis or regeneration or significant endomysial fibrosis, are present. The disease is caused by variants affecting the gene represented in this entry MIM: 255320 PMID 12112081 ↗ · PMID 12136074 ↗ · PMID 12719381 ↗ · PMID 12937085 ↗ · PMID 16380615 ↗ · PMID 17226826 ↗ · PMID 18253926 ↗ · PMID 20583297 ↗ |
| 疾病關聯 | RYR1 缺陷可能是 Samaritan myopathy 的病因。這是一種病程良性的先天性肌病,患者出生時可有嚴重肌張力低下與呼吸窘迫;與其他先天性肌病不同,健康狀況會持續改善,成年後通常僅受輕微影響。 | 資料庫紀錄 | 證據與來源Defects in RYR1 may be a cause of Samaritan myopathy, a congenital myopathy with benign course. Patients display severe hypotonia and respiratory distress at birth. Unlike other congenital myopathies, the health status constantly improves and patients are minimally affected at adulthood |
| 疾病關聯 | King-Denborough syndrome 是常染色體顯性疾病,與影響 RYR1 的變異相關,典型特徵包括外觀異常、先天性肌病及惡性高熱易感性。不同病例的表現程度不一,來源並未指出所有患者均具有相同症狀或嚴重程度。 | 含實驗來源 | 證據與來源King-Denborough syndrome KDS An autosomal dominant disorder characterized by the triad of dysmorphic features, congenital myopathy, and susceptibility to malignant hyperthermia. Variable expressivity has been reported in several cases. The disease is caused by variants affecting the gene represented in this entry MIM: 619542 PMID 18765655 ↗ · PMID 21514828 ↗ · PMID 27918309 ↗ |
核酸與蛋白質序列
GCAGTTCCATCTACCTCGCGGGTGCCTCTGGTGTCTCCAG40AGGTCTCCGACCCCAGCCCGCCCCCAGCCCTCCCGCCCAG80CCCGCAGCCCCCTCCCTCTGTTCCCCGACCTCAGACCCTG120GGCTTCCGACCTCGACATCATGGGTGACGCAGAAGGCGAA160GACGAGGTCCAGTTCCTGCGGACGGACGATGAGGTGGTCC200TGCAGTGCAGCGCTACCGTGCTCAAGGAGCAGCTCAAGCT240CTGCCTGGCCGCCGAGGGCTTCGGCAACCGCCTGTGCTTC280CTGGAGCCCACTAGCAACGCGCAGAATGTGCCCCCCGATC320TGGCCATCTGTTGCTTCGTCCTGGAGCAGTCCCTGTCTGT360GCGAGCCCTGCAGGAGATGCTGGCTAACACGGTGGAGGCT400GGCGTGGAGTCATCCCAGGGCGGGGGACACAGGACGCTCC440TGTATGGCCATGCCATCCTGCTCCGGCATGCACACAGCCG480CATGTATCTGAGCTGCCTCACCACCTCCCGCTCCATGACT520GACAAGCTGGCCTTCGATGTGGGACTGCAGGAGGACGCAA560CAGGAGAGGCTTGCTGGTGGACCATGCACCCAGCCTCCAA600GCAGAGGTCTGAAGGAGAAAAGGTCCGCGTTGGGGATGAC640ATCATCCTTGTCAGTGTCTCCTCCGAGCGCTACCTGCACC680TGTCGACCGCCAGTGGGGAGCTCCAGGTTGACGCTTCCTT720CATGCAGACACTATGGAACATGAACCCCATCTGCTCCCGC760TGCGAAGAGGGCTTCGTGACGGGAGGTCACGTCCTCCGCC800TCTTTCATGGACATATGGATGAGTGTCTGACCATTTCCCC840TGCTGACAGTGATGACCAGCGCAGACTTGTCTACTATGAG880GGGGGAGCTGTGTGCACTCATGCCCGCTCCCTCTGGAGGC920TGGAGCCACTGAGAATCAGCTGGAGTGGGAGCCACCTGCG960cDNA 使用 DNA 字母 T;mRNA 模式改以 U 顯示。轉錄本保留已註解的非編碼區,未另外加入 poly(A) 尾;非編碼 RNA 的參考轉錄本也可能仍需後續加工。數字為所選序列的 1-based 位置。長序列以黃色捲軸瀏覽,可複製或下載完整轉錄本與蛋白質;基因組 DNA 隨捲動取得所需範圍。